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First major challenge for Padres' new ownership hides at bottom of farm system rankings

MLB's Pipeline ranks Padres' farm system dead last for third straight cycle, meaning scouting and development could very well be the new ownership's first test
Mar 26, 2024; San Diego, California, USA; San Diego Padres catcher Ethan Salas throws to first base during the ninth inning against the Seattle Mariners at Petco Park. Mandatory Credit: Orlando Ramirez-USA TODAY Sports
Mar 26, 2024; San Diego, California, USA; San Diego Padres catcher Ethan Salas throws to first base during the ninth inning against the Seattle Mariners at Petco Park. Mandatory Credit: Orlando Ramirez-USA TODAY Sports | USA TODAY Sports via Reuters Connect

It is no secret that the Padres farm system is one of, if not the most concerning weak links of their organization. For the third consecutive cycle, MLB.com has ranked San Diego dead last in the league's farm system rankings, with their only prospect in the MLB's Top 100 being Ethan Salas at No. 23. The MLB Pipeline had previously ranked the Padres 30th in the 2025 midseason rank, as well as the 2026 preseason rank.

After the Padres were sold this month to José E. Feliciano and Kwanza Jones, the two promised "patient capital", meaning the investment of their scouting and player development could very well be their first test.

Why the Padres farm system remains last in MLB rankings

Many may be wondering how San Diego got themselves in this situation, well, the answer is actually pretty simple. The Friars have been in a unique position for pretty much this entire decade. The team has been in a "buy now" situation for each July (changed to August in 2026) trade deadline. Aggressively, the front office has been continuously dealing top prospects in exchange for solidified big league assets who could help the team make a deep playoff run.

The problem does not necessarily have anything to do with a development issue, nor a scouting issue. Rather, the organization has been repeatedly using farm system prospects as currency, in which they been failing to replenish at a rate even close to sustainable.

How Padres’ new ownership can rebuild MLB’s No. 30 farm system

This is the tricky part considering the Padres are still in a "win now" scenario, as they currently an NL Wild Card spot with just over a month of regular season play remaining. First, it is encouraging to note that the Padres 2026 draft class is one of the more highly regarded classes. The team has signed 20 of their draft picks, in addition to nine more undrafted free-agents. With many of the Padres top, and most promising prospects being on the younger side, it is important for the team to commit to their developments. This is because although the team ranks dead last in farm system, they do actually have some serious talent to continue to invest in on the lower minor league levels.

Let's be real here, while San Diego is in a "win now" scenario, they are not a team being thrown in any World Series conversations. Until they can truly put themselves in that tier, they should not be trading prospects that the team could use in their long-term future for MLB players, typically on the older side, that are far from franchise-changing.

Once again, as the new ownership wants to commit to "patient capital", it will be interesting to see the route the new ownership and front office take in regards to their future when it comes to the upcoming off-seasons, as well as trade deadlines.

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